Dana-Farber Cancer Inst., Inc. v. Ono Pharm. Co.

Decision Date17 May 2019
Docket NumberCivil Action No. 15-13443-PBS
Citation379 F.Supp.3d 53
CourtU.S. District Court — District of Massachusetts
Parties DANA-FARBER CANCER INSTITUTE, INC., Plaintiff, v. ONO PHARMACEUTICAL CO., LTD. ; Tasuku Honjo; E.R. Squibb & Sons, L.L.C.; and Bristol-Myers Squibb, Co., Defendants.

Donald R. Ware, Barbara A. Fiacco, Brendan T. Jones, Daniel L. McFadden, Emma S. Winer, Michael B. Hoven, Sarah S. Burg, Foley Hoag LLP, Boston, MA, for Plaintiff.

Dianne B. Elderkin, Pro Hac Vice, Matthew G. Hartman, Pro Hac Vice, Jason Weil, Pro Hac Vice, Matthew A. Pearson, Pro Hac Vice, Steven D. Maslowski, Pro Hac Vice, Melissa R. Gibson, Pro Hac Vice, Akin Gump Strauss Hauer & Feld LLP, Philadelphia, PA, Amy K. Wigmore, Wilmer Cutler Pickering Hale and Dorr LLP, Rachel J. Elsby, Pro Hac Vice, Akin Gump Strauss Hauer & Feld, LLP, Washington, DC, Kelli J. Powell, Kevin M. Yurkerwich, Wilmer Cutler Pickering Hale and Dorr LLP, Kevin S. Prussia, Wilmer Hale LLP, Boston, MA, Taisuke Igaki, Nishumura & Asahi, for Defendants.

FINDINGS OF FACT, CONCLUSIONS OF LAW, AND ORDER

Hon. Patti B. Saris, Chief United States District Judge

TABLE OF CONTENTS

INTRODUCTION...60

FINDINGS OF FACT...60

II. Discoveries of PD-1 and 292...64
A. Dr. Honjo Discovers the PD-1 Receptor...64
B. Dr. Honjo Asks for Help Identifying the Ligand for PD-1 and Begins to Collaborate with Dr. Wood in September 1998...65
C. Dr. Freeman Discovers the 292 Ligand in July 1998...65
D. Dr. Wood Connects the PD-1/PD-L1 Pathway in September 1999...68
III. October 25, 1999 Collaboration Meeting in Cambridge...69
IV. Developments Between the October 1999 and May 2000 Meetings...70
A. Dr. Freeman and Dr. Honjo Exchange Reagents, and Dr. Wood and Dr. Honjo Run Experiments Confirming the Inhibitory Effect of the PD-1/PD-L1 Pathway in November and December 1999...70
B. Dr. Freeman and Dr. Wood File a Provisional Patent Application in November 1999...71
C. Dr. Freeman, Dr. Wood, and Dr. Honjo Draft a Journal Article on the PD-1/PD-L1 Pathway in March and April 2000...71
D. Dr. Freeman Conducts Immunohistochemistry ("IHC") Experiments in the Winter of 2000...72
E. Dr. Freeman Discovers PD-L2 in the Fall of 1999...72
F. Dr. Freeman, Dr. Wood, and Dr. Minato Independently Develop Antibodies Throughout 1999 and 2000...73
G. Dr. Honjo and Dr. Wood's Meeting in March 2000...73
H. Dr. Iwai Begins In Vivo Tumor Model Studies in March 2000...74
V. May 13, 2000 Collaboration Meeting in Seattle...74
VI. Developments During the Summer of 2000...74
VII. September 8, 2000 Collaboration Meeting in Cambridge...75
IX. Dr. Honjo and Ono File Patent Application in July 2002...76
X. BMS Develops Nivolumab with Exclusive License to the Honjo Patents...77
XII. Dr. Honjo Wins the Nobel Prize...78

EXPERT OPINIONS...78

I. Dana-Farber's Expert: Dr. Kenneth Murphy...79
II. Defendants' Expert: Dr. Mark Greene...80

CONCLUSIONS OF LAW...81

I. Joint Inventorship...81
A. Legal Standard...81
B. Claim Construction...83
C. Corroboration...84
D. The Collaboration of Dr. Freeman, Dr. Wood, and Dr. Honjo...86
E. Conception of the Honjo Patents...88
F. Dr. Freeman's and Dr. Wood's Contributions to Conception...89
1. Dr. Freeman and Dr. Wood's Discovery of PD-L1 and Blocking Antibodies and Dr. Wood's Discovery of the Inhibitory Effect of the PD-1/PD-L1 Pathway...89
2. Dr. Freeman's Discovery of the Expression of PD-L1 on Certain Tumors...92
3. Dr. Freeman and Dr. Wood's Discovery and Characterization of PD-L2...93
4. Method of Treating Cancer...94
5. Dr. Freeman's and Dr. Wood's Provision of Reagents...94
G. Significance of Dr. Freeman's and Dr. Wood's Contributions to the Claims in the Honjo Patents...95
1. Use of Anti-PD-1 or Anti-PD-L1 Antibodies to Treat Cancer...95
2. Expression or Over-Expression of PD-L1 or PD-L2...97
3. PD-L1 Expression by Specific Tumors...99
H. Conclusion...99
ORDER...102
INTRODUCTION

Plaintiff Dana-Farber Cancer Institute, Inc. ("Dana-Farber") brings this civil action to correct inventorship of six disputed patents ("the Honjo patents") against Defendants Ono Pharmaceuticals Co., Ltd. ("Ono"); Dr. Tasuku Honjo; E.R. Squibb & Sons, L.L.C.; and Bristol-Myers Squibb, Co. ("BMS"). The Honjo patents claim methods of cancer immunotherapy. Dr. Honjo is the named inventor on these patents together with two colleagues from Kyoto University and a researcher at Ono. Dana-Farber contends that Dr. Gordon Freeman, one of its professors, and Dr. Clive Wood, formerly of the Genetics Institute ("GI"), made significant contributions to the conception of the inventions in the Honjo patents through, among other things, the discovery and characterization of the PD-L1 and PD-L2 ligands, the discovery that the interaction between PD-1 and PD-L1 ("the PD-1/PD-L1 pathway") is inhibitory and could be blocked by antibodies, and the discovery that PD-L1 is expressed in human tumors.1 Dana-Farber seeks to add Dr. Freeman and Dr. Wood as joint inventors on the Honjo patents. Defendants argue that Dr. Freeman's and Dr. Wood's contributions to the inventions are not significant enough to make them joint inventors.

After a bench trial, I find Dana-Farber has presented clear and convincing evidence that Dr. Freeman and Dr. Wood are joint inventors of the six Honjo patents. Dr. Honjo collaborated extensively with both Dr. Freeman and Dr. Wood from at least October 19992 until at least September 2000 through numerous meetings, joint authorship of scientific journal articles, written collaboration agreements, and sharing of experimental results and ideas. Indeed, Dr. Honjo himself referred to his work with Dr. Freeman and Dr. Wood as a collaboration on at least six occasions. While the relationship among these three brilliant scientists eventually soured, all three made significant contributions to the inventions. After a review of the extensive record and evaluation of the credibility of the witnesses, I conclude that both Dr. Freeman's and Dr. Wood's contributions were significant in light of the dimension of the full inventions claimed in the six Honjo patents, which are all premised on blocking the inhibitory interaction of the PD-1/PD-L1 pathway to treat tumors that express PD-L1 or PD-L2. Judgment shall enter for Dana-Farber.

FINDINGS OF FACT
I. Scientific Background 3
A. The Immune System and Receptor-Ligand Signaling

The immune system is the body's defense against foreign invaders, such as viruses, bacteria, and other pathogens. The immune system works through a network of different types of cells, each with a specific function. Dendritic cells, for example, detect the presence of pathogens and alert the rest of immune system. B cells respond by producing proteins called antibodies that bind to pathogens and neutralize them. The most important immune cells for the purposes of this dispute are T cells. T cells either coordinate the immune system's response to pathogens ("helper" T cells) or eliminate infected or abnormal cells from the body ("killer" or "cytotoxic" T cells). Killer T cells can help prevent cancer from growing in the body. Once the immune system recognizes cancer cells as abnormal, T cells attack the cancer cells in the same way they attack cells infected with viruses and bacteria.

In a healthy person, the immune system activates to fight pathogens and then deactivates to protect healthy cells from immune attack. Disorders of the immune system come in two forms. An individual with a suppressed immune response, such as someone with AIDS, is highly susceptible to infections and other diseases. An overactive immune response, on the other hand, can lead to autoimmune diseases in which the immune system attacks healthy cells.

To maintain a healthy balance, the immune system relies on communication among immune cells and between immune cells and other cells found in the body. Cells can communicate through receptor-ligand interactions. A receptor is a protein located on the cellular membrane that allows the cell to detect and respond to its environment. The receptor receives a signal from outside the cell and then transmits the signal to the internal components of the cell to trigger a response. Ligands are proteins that bind to receptors to initiate signaling. Ligands can be secreted by cells ("cytokines") or found on the cell surface. When a ligand binds to its receptor, it activates the intracellular signaling pathway that tells the cell with the receptor how to respond.

Receptor-ligand interactions play a critical role in regulating the immune system. In the presence of pathogens, some receptors act as accelerators that "upregulate" or "stimulate" immune cells to increase the immune response. To prevent activated immune cells from damaging healthy cells, other receptors act as brakes to "downregulate" or "inhibit" the immune response. The immune system maintains a balance via the "on-off switches" of receptor-ligand signaling by upregulating when it detects infected or abnormal cells and downregulating once those cells are eliminated.

The primary receptor on a T cell is known as the T cell receptor ("TCR"). The TCR binds to foreign proteins known as antigens, which come from viruses, bacteria, or cancers. In combination with other signals, binding between the TCR and antigen activates the T cell to attack the pathogen.

T cells also have other receptors on their surface. For example, a signal sent to the TCR does not activate a T cell unless a ligand binds to one of its co-stimulatory receptors. An important co-stimulatory receptor is called CD28. CD28's two ligands, B7-1 and B7-2, are expressed on dendritic cells that have detected infection or cancer. In order for a T cell to activate, an antigen on the dendritic cell must bind to the TCR on the T cell...

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4 books & journal articles
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    • ABA General Library Landslide No. 12-2, November 2019
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    • November 1, 2019
    ...17. Id. at 1364. 18. Id. 19. Id. at 1366 (citing Pannu v. Iolab Corp., 155 F.3d 1344, 1351 (Fed. Cir. 1998)). 20. Id. 21. Id. 22. 379 F. Supp. 3d 53 (D. Mass. 2019). 23. Id. at 80. 24. Id. at 60, 70, 76. 25. Id. at 77. 26. Id. 27. Id. 28. Id. at 77–78. 29. Id. at 87. 30. Id. at 78. For more......
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    ...17. Id. at 1364. 18. Id. 19. Id. at 1366 (citing Pannu v. Iolab Corp., 155 F.3d 1344, 1351 (Fed. Cir. 1998)). 20. Id. 21. Id. 22. 379 F. Supp. 3d 53 (D. Mass. 2019). 23. Id. at 80. 24. Id. at 60, 70, 76. 25. Id. at 77. 26. Id. 27. Id. 28. Id. at 77–78. 29. Id. at 87. 30. Id. at 78. For more......
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